chembl-mcp-server
by FastDrop
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications. Official MCP Registry: io.github.cyanheads/chembl-mcp-server@0.3.3. Remote endpoint: https://chembl.caseyjhand.com/mcp
Problem it solves
Discoverable MCP server listed in the official MCP Registry.
How it's different
Remote MCP endpoint ingested from the official registry and probed by FastDrop.
Ingested from the official MCP Registry
FastDrop pulled this entry from the official MCP Registry as io.github.cyanheads/chembl-mcp-server and probed the endpoint. The maker did not submit it, so the outbound link is not endorsed
and the description is not theirs.
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Read directly from the endpoint on 11 Oct 2026. Not supplied by the maker.
chembl_search_moleculesDiscovery entry point for compounds. Find by name / ChEMBL ID / InChIKey with the default search_type=name (supply query), or run a structure search with search_type exact | similarity | substructure
chembl_get_bioactivitiesThe flagship compound↔target bioactivity bridge: measurements for a molecule (target deconvolution / selectivity), a target (lead finding), or both together (how potently one compound hits one target)
chembl_search_targetsResolve a protein/gene/UniProt accession to the ChEMBL target ID that chembl_get_bioactivities needs for the target→leads workflow. Supply at least one of accession (UniProt, e.g. P00533), gene_symbol
chembl_get_drug_infoPharmacology for a drug (molecule): mechanism(s) of action, the molecular target(s) it acts on, action type (inhibitor / agonist / …), first-approval year, and clinical indications with the max phase
chembl_get_assayAssay provenance behind a bioactivity row: description, type (binding / functional / ADMET / toxicity), the target it measures, organism, and ChEMBL's 1–9 confidence score (9 = direct assay on the pro
chembl_dataframe_queryRun a read-only SQL SELECT over the bioactivity rows chembl_get_bioactivities spilled to a canvas — rank, group, dedupe, and aggregate across the FULL set, not the inline preview. Reference each stage
chembl_dataframe_describeList the tables and columns staged on a canvas by chembl_get_bioactivities — inspect before calling chembl_dataframe_query to write correct SQL. Returns each table with its row count, kind (table | vi
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